HL_8CAS_019

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGCCGGUCGGAUUUCCA

Length

18 nucleotides

Bulged bases

8CAS|1|2|C|658

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CAS|1|2|U|650
8CAS|1|2|G|651
8CAS|1|2|G|652
8CAS|1|2|C|653
8CAS|1|2|C|654
8CAS|1|2|G|655
8CAS|1|2|G|656
8CAS|1|2|U|657
8CAS|1|2|C|658
8CAS|1|2|G|676
8CAS|1|2|G|677
8CAS|1|2|A|678
8CAS|1|2|U|679
8CAS|1|2|U|680
8CAS|1|2|U|681
8CAS|1|2|C|682
8CAS|1|2|C|683
8CAS|1|2|A|684

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain p

Eukaryotic translation initiation factor 3 subunit B