HL_8CAS_020

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

8CAS|1|2|C|709, 8CAS|1|2|U|710, 8CAS|1|2|U|711, 8CAS|1|2|G|714

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAS_020 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2882

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CAS|1|2|G|703
8CAS|1|2|C|704
8CAS|1|2|U|705
8CAS|1|2|A|706
8CAS|1|2|A|707
8CAS|1|2|C|708
8CAS|1|2|C|709
8CAS|1|2|U|710
8CAS|1|2|U|711
8CAS|1|2|G|712
8CAS|1|2|A|713
8CAS|1|2|G|714
8CAS|1|2|C|726
8CAS|1|2|U|727
8CAS|1|2|U|728
8CAS|1|2|G|729
8CAS|1|2|G|730
8CAS|1|2|C|731
8CAS|1|2|G|732
8CAS|1|2|A|733
8CAS|1|2|A|734
8CAS|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-B