HL_8CAS_038

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

8CAS|1|2|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAS_038 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.1928

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8CAS|1|2|G|1594
8CAS|1|2|U|1595
8CAS|1|2|C|1596
8CAS|1|2|A|1597
8CAS|1|2|U|1598
8CAS|1|2|C|1599
8CAS|1|2|A|1600
8CAS|1|2|G|1601
8CAS|1|2|C|1602

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S19-A

Chain L

40S ribosomal protein S20

Chain N

RPS29A isoform 1