HL_8CAS_041

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAS_041 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.2705

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

8CAS|1|2|A|829
8CAS|1|2|U|830
8CAS|1|2|U|831
8CAS|1|2|U|832
8CAS|1|2|U|833
8CAS|1|2|G|834
8CAS|1|2|U|835
8CAS|1|2|U|836
8CAS|1|2|G|837
8CAS|1|2|G|838
8CAS|1|2|U|839
8CAS|1|2|U|840
8CAS|1|2|U|841
8CAS|1|2|C|842
8CAS|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S11-A