HL_8CBJ_001
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CBJ_001 not in the Motif Atlas
- Geometric match to HL_4V88_186
- Geometric discrepancy: 0.1068
- The information below is about HL_4V88_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8CBJ|1|2|G|7
8CBJ|1|2|U|8
8CBJ|1|2|U|9
8CBJ|1|2|G|10
8CBJ|1|2|A|11
8CBJ|1|2|U|12
8CBJ|1|2|C|13
8CBJ|1|2|C|14
8CBJ|1|2|U|15
8CBJ|1|2|G|16
8CBJ|1|2|C|17
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S2
- Chain X
- 40S ribosomal protein S23-A
- Chain l
- non-specific serine/threonine protein kinase
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