HL_8CBJ_009
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CBJ_009 not in the Motif Atlas
- Geometric match to HL_5U3G_001
- Geometric discrepancy: 0.2137
- The information below is about HL_5U3G_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.8
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 23
Unit IDs
8CBJ|1|2|U|368
8CBJ|1|2|A|369
8CBJ|1|2|A|370
8CBJ|1|2|G|371
8CBJ|1|2|G|372
8CBJ|1|2|G|373
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S2
- Chain J
- 40S ribosomal protein S9-A
- Chain L
- 40S ribosomal protein S11-A
- Chain W
- 40S ribosomal protein S22-A
- Chain X
- 40S ribosomal protein S23-A
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