HL_8CBJ_011

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8CBJ|1|2|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CBJ_011 not in the Motif Atlas

Geometric match to HL_4LFB_009

Geometric discrepancy: 0.1269

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

8CBJ|1|2|C|414
8CBJ|1|2|C|415
8CBJ|1|2|A|416
8CBJ|1|2|A|417
8CBJ|1|2|G|418
8CBJ|1|2|G|419

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-B

Chain k

TSR1 isoform 1