HL_8CBJ_015
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGCAAGUCUGGUGCCAGCAGC
- Length
- 21 nucleotides
- Bulged bases
- 8CBJ|1|2|U|558, 8CBJ|1|2|C|565, 8CBJ|1|2|C|566, 8CBJ|1|2|A|567, 8CBJ|1|2|A|570
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CBJ|1|2|G|552
8CBJ|1|2|G|553
8CBJ|1|2|C|554
8CBJ|1|2|A|555
8CBJ|1|2|A|556
8CBJ|1|2|G|557
8CBJ|1|2|U|558
8CBJ|1|2|C|559
8CBJ|1|2|U|560
8CBJ|1|2|G|561
8CBJ|1|2|G|562
8CBJ|1|2|U|563
8CBJ|1|2|G|564
8CBJ|1|2|C|565
8CBJ|1|2|C|566
8CBJ|1|2|A|567
8CBJ|1|2|G|568
8CBJ|1|2|C|569
8CBJ|1|2|A|570
8CBJ|1|2|G|571
8CBJ|1|2|C|572
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S2
- Chain J
- 40S ribosomal protein S9-A
- Chain X
- 40S ribosomal protein S23-A
- Chain e
- 40S ribosomal protein S30-A
- Chain k
- TSR1 isoform 1
- Chain l
- non-specific serine/threonine protein kinase
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