HL_8CBJ_017

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8CBJ|1|2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CBJ_017 not in the Motif Atlas

Geometric match to HL_4V88_203

Geometric discrepancy: 0.1491

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8CBJ|1|2|U|764
8CBJ|1|2|G|765
8CBJ|1|2|U|766
8CBJ|1|2|U|767
8CBJ|1|2|C|768
8CBJ|1|2|A|769
8CBJ|1|2|A|770
8CBJ|1|2|A|771
8CBJ|1|2|G|772

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-B

Chain J

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S24-A