HL_8CBJ_025

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CBJ_025 not in the Motif Atlas

Geometric match to HL_4LFB_020

Geometric discrepancy: 0.118

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8CBJ|1|2|C|1121
8CBJ|1|2|G|1122
8CBJ|1|2|C|1123
8CBJ|1|2|A|1124
8CBJ|1|2|A|1125
8CBJ|1|2|G|1126

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain y

rRNA adenine N(6)-methyltransferase