HL_8CBJ_026

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC

Length

3 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CBJ_026 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1632

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8CBJ|1|2|G|1188
8CBJ|1|2|A|1189
8CBJ|1|2|C|1197

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein S20

Chain d

RPS29A isoform 1

Chain k

TSR1 isoform 1

Chain l

non-specific serine/threonine protein kinase