HL_8CBJ_027

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CBJ|1|2|A|1238
8CBJ|1|2|U|1239
8CBJ|1|2|U|1240
8CBJ|1|2|G|1241
8CBJ|1|2|A|1242
8CBJ|1|2|G|1243
8CBJ|1|2|A|1244
8CBJ|1|2|G|1245
8CBJ|1|2|C|1246
8CBJ|1|2|U|1247

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain P

RPS15 isoform 1

Chain i

ENP1 isoform 1