HL_8CBJ_028

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CBJ_028 not in the Motif Atlas

Geometric match to HL_7RQB_063

Geometric discrepancy: 0.0843

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8CBJ|1|2|A|1296
8CBJ|1|2|G|1297
8CBJ|1|2|U|1298
8CBJ|1|2|G|1299
8CBJ|1|2|A|1300
8CBJ|1|2|U|1301

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein S0-A

Chain C

40S ribosomal protein S2