HL_8CBJ_031

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CBJ_031 not in the Motif Atlas

Geometric match to HL_5J7L_026

Geometric discrepancy: 0.2574

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8CBJ|1|2|U|1396
8CBJ|1|2|U|1397
8CBJ|1|2|U|1398
8CBJ|1|2|C|1399
8CBJ|1|2|A|1400
8CBJ|1|2|A|1401
8CBJ|1|2|G|1402

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S17-A

Chain a

20S-pre-rRNA D-site endonuclease NOB1