HL_8CBJ_032

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CBJ_032 not in the Motif Atlas

Geometric match to HL_4Y1M_002

Geometric discrepancy: 0.1178

The information below is about HL_4Y1M_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8CBJ|1|2|C|1501
8CBJ|1|2|G|1502
8CBJ|1|2|A|1503
8CBJ|1|2|G|1504
8CBJ|1|2|A|1505
8CBJ|1|2|G|1506

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S18-A

Chain T

40S ribosomal protein S19-A