HL_8CCS_019

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CCS_019 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.0772

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CCS|1|AA|G|844
8CCS|1|AA|G|845
8CCS|1|AA|A|846
8CCS|1|AA|A|847
8CCS|1|AA|A|848
8CCS|1|AA|C|849

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain c

Small subunit ribosomal RNA; SSU rRNA

Chain p

40S ribosomal protein S13