HL_8CCS_051

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

GCUUCGGC

Length

8 nucleotides

Bulged bases

8CCS|1|AA|C|2470

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CCS_051 not in the Motif Atlas

Homologous match to HL_8C3A_052

Geometric discrepancy: 0.5141

The information below is about HL_8C3A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70228.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8CCS|1|AA|G|2469
8CCS|1|AA|C|2470
8CCS|1|AA|U|2471
8CCS|1|AA|U|2472
8CCS|1|AA|C|2473
8CCS|1|AA|G|2474
8CCS|1|AA|G|2475
8CCS|1|AA|C|2476

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S25-A