HL_8CCS_066

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8CCS|1|AA|G|3116, 8CCS|1|AA|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CCS_066 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.065

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8CCS|1|AA|C|3110
8CCS|1|AA|U|3111
8CCS|1|AA|G|3112
8CCS|1|AA|A|3113
8CCS|1|AA|A|3114
8CCS|1|AA|C|3115
8CCS|1|AA|G|3116
8CCS|1|AA|C|3117
8CCS|1|AA|C|3118
8CCS|1|AA|U|3119
8CCS|1|AA|C|3120
8CCS|1|AA|U|3121
8CCS|1|AA|A|3122
8CCS|1|AA|A|3123
8CCS|1|AA|G|3124

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain LL

60S ribosomal protein L9-A

Chain Y

Ubiquitin-60S ribosomal protein L40