HL_8CCS_091

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

CAU(OMC)CAAGG(A2M)AG

Length

12 nucleotides

Bulged bases

8CCS|1|c|A|416

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CCS|1|c|C|411
8CCS|1|c|A|412
8CCS|1|c|U|413
8CCS|1|c|OMC|414
8CCS|1|c|C|415
8CCS|1|c|A|416
8CCS|1|c|A|417
8CCS|1|c|G|418
8CCS|1|c|G|419
8CCS|1|c|A2M|420
8CCS|1|c|A|421
8CCS|1|c|G|422

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L23-A

Chain j

40S ribosomal protein S6-A