HL_8CCS_093

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CCS_093 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1145

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8CCS|1|c|A|520
8CCS|1|c|A|521
8CCS|1|c|U|522
8CCS|1|c|G|523
8CCS|1|c|U|524
8CCS|1|c|A|525
8CCS|1|c|A|526
8CCS|1|c|A|527
8CCS|1|c|U|528
8CCS|1|c|A|529
8CCS|1|c|C|530
8CCS|1|c|C|531
8CCS|1|c|U|532

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain h

40S ribosomal protein S4-A

Chain m

40S ribosomal protein S9-A