HL_8CCS_108

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8CCS|1|c|U|1398, 8CCS|1|c|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CCS_108 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2293

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8CCS|1|c|U|1396
8CCS|1|c|U|1397
8CCS|1|c|U|1398
8CCS|1|c|C|1399
8CCS|1|c|A|1400
8CCS|1|c|A|1401
8CCS|1|c|G|1402

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain t

40S ribosomal protein S17-A