HL_8CCS_115

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

(A2M)GAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CCS_115 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.0629

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8CCS|1|AA|A2M|2220
8CCS|1|AA|G|2221
8CCS|1|AA|A|2222
8CCS|1|AA|A|2223
8CCS|1|AA|A|2224
8CCS|1|AA|U|2225

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L36-A

Chain a

60S ribosomal protein L42-A