3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
UUGGAACA
Length
8 nucleotides
Bulged bases
8CDL|1|AA|C|200
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CDL_005 not in the Motif Atlas
Homologous match to HL_8C3A_005
Geometric discrepancy: 0.0544
The information below is about HL_8C3A_005
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_58705.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
23

Unit IDs

8CDL|1|AA|U|194
8CDL|1|AA|U|195
8CDL|1|AA|G|196
8CDL|1|AA|G|197
8CDL|1|AA|A|198
8CDL|1|AA|A|199
8CDL|1|AA|C|200
8CDL|1|AA|A|201

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain GG
60S ribosomal protein L4-A
Chain K
60S ribosomal protein L26-A
Chain Q
60S ribosomal protein L32

Coloring options:


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