HL_8CDL_005

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8CDL|1|AA|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0544

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8CDL|1|AA|U|194
8CDL|1|AA|U|195
8CDL|1|AA|G|196
8CDL|1|AA|G|197
8CDL|1|AA|A|198
8CDL|1|AA|A|199
8CDL|1|AA|C|200
8CDL|1|AA|A|201

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain GG

60S ribosomal protein L4-A

Chain K

60S ribosomal protein L26-A

Chain Q

60S ribosomal protein L32