HL_8CDL_010

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0678

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CDL|1|AA|A|357
8CDL|1|AA|G|358
8CDL|1|AA|U|359
8CDL|1|AA|G|360
8CDL|1|AA|A|361
8CDL|1|AA|U|362

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain GG

60S ribosomal protein L4-A

Chain V

60S ribosomal protein L37-A

Chain X

60S ribosomal protein L39