HL_8CDL_016
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- UGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CDL_016 not in the Motif Atlas
- Homologous match to HL_8C3A_016
- Geometric discrepancy: 0.0582
- The information below is about HL_8C3A_016
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8CDL|1|AA|U|707
8CDL|1|AA|G|708
8CDL|1|AA|A|709
8CDL|1|AA|A|710
8CDL|1|AA|A|711
8CDL|1|AA|G|712
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L18-A
- Chain M
- 60S ribosomal protein L28
- Chain OO
- 60S ribosomal protein L13-A
- Chain U
- 60S ribosomal protein L36-A
Coloring options: