HL_8CDL_034

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUGAUUUUAUGCAGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_034 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2525

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8CDL|1|AA|C|1563
8CDL|1|AA|U|1564
8CDL|1|AA|G|1565
8CDL|1|AA|A|1566
8CDL|1|AA|U|1567
8CDL|1|AA|U|1568
8CDL|1|AA|U|1569
8CDL|1|AA|U|1570
8CDL|1|AA|A|1571
8CDL|1|AA|U|1572
8CDL|1|AA|G|1573
8CDL|1|AA|C|1574
8CDL|1|AA|A|1575
8CDL|1|AA|G|1576
8CDL|1|AA|G|1577

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain J

60S ribosomal protein L25

Chain KK

60S ribosomal protein L8-A