HL_8CDL_035

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8CDL|1|AA|U|1606, 8CDL|1|AA|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_035 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.087

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CDL|1|AA|G|1599
8CDL|1|AA|U|1600
8CDL|1|AA|U|1601
8CDL|1|AA|A|1602
8CDL|1|AA|A|1603
8CDL|1|AA|G|1604
8CDL|1|AA|A|1605
8CDL|1|AA|U|1606
8CDL|1|AA|U|1607
8CDL|1|AA|C|1608

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain J

60S ribosomal protein L25

Chain S

60S ribosomal protein L34-A