HL_8CDL_037

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8CDL|1|AA|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1375

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8CDL|1|AA|G|1680
8CDL|1|AA|U|1681
8CDL|1|AA|U|1682
8CDL|1|AA|A|1683
8CDL|1|AA|U|1684
8CDL|1|AA|C|1685
8CDL|1|AA|U|1686
8CDL|1|AA|U|1687
8CDL|1|AA|U|1688

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain G

60S ribosomal protein L22-A