HL_8CDL_046

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8CDL|1|AA|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_046 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.0749

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CDL|1|AA|A|2164
8CDL|1|AA|G|2165
8CDL|1|AA|A|2166
8CDL|1|AA|A|2167
8CDL|1|AA|A|2168
8CDL|1|AA|G|2169
8CDL|1|AA|U|2170

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain KK

60S ribosomal protein L8-A

Chain QQ

60S ribosomal protein L15-A