HL_8CDL_051

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUAC

Length

44 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|AA|G|2452
8CDL|1|AA|U|2453
8CDL|1|AA|G|2454
8CDL|1|AA|U|2455
8CDL|1|AA|A|2456
8CDL|1|AA|G|2457
8CDL|1|AA|A|2458
8CDL|1|AA|A|2459
8CDL|1|AA|U|2460
8CDL|1|AA|A|2461
8CDL|1|AA|A|2462
8CDL|1|AA|G|2463
8CDL|1|AA|U|2464
8CDL|1|AA|G|2465
8CDL|1|AA|G|2466
8CDL|1|AA|G|2467
8CDL|1|AA|A|2468
8CDL|1|AA|G|2469
8CDL|1|AA|C|2470
8CDL|1|AA|U|2471
8CDL|1|AA|U|2472
8CDL|1|AA|C|2473
8CDL|1|AA|G|2474
8CDL|1|AA|G|2475
8CDL|1|AA|C|2476
8CDL|1|AA|G|2477
8CDL|1|AA|C|2478
8CDL|1|AA|C|2479
8CDL|1|AA|A|2480
8CDL|1|AA|G|2481
8CDL|1|AA|U|2482
8CDL|1|AA|G|2483
8CDL|1|AA|A|2484
8CDL|1|AA|A|2485
8CDL|1|AA|A|2486
8CDL|1|AA|U|2487
8CDL|1|AA|A|2488
8CDL|1|AA|C|2489
8CDL|1|AA|C|2490
8CDL|1|AA|A|2491
8CDL|1|AA|C|2492
8CDL|1|AA|U|2493
8CDL|1|AA|A|2494
8CDL|1|AA|C|2495

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S25-A

Chain Cc

Transfer RNA; tRNA

Chain i

40S ribosomal protein S5