HL_8CDL_052

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

8CDL|1|AA|U|2571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_052 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.3869

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8CDL|1|AA|C|2568
8CDL|1|AA|A|2569
8CDL|1|AA|U|2570
8CDL|1|AA|U|2571
8CDL|1|AA|C|2572
8CDL|1|AA|G|2573

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L27-A