HL_8CDL_053

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8CDL|1|AA|G|2618

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_053 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1019

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8CDL|1|AA|C|2616
8CDL|1|AA|U|2617
8CDL|1|AA|G|2618
8CDL|1|AA|OMG|2619
8CDL|1|AA|G|2620
8CDL|1|AA|G|2621
8CDL|1|AA|C|2622
8CDL|1|AA|G|2623
8CDL|1|AA|G|2624

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain MM

60S ribosomal protein L10

Chain N

60S ribosomal protein L29