HL_8CDL_057

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

U(OMU)UCAG(OMU)GUGA

Length

11 nucleotides

Bulged bases

8CDL|1|AA|A|2727

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|AA|U|2723
8CDL|1|AA|OMU|2724
8CDL|1|AA|U|2725
8CDL|1|AA|C|2726
8CDL|1|AA|A|2727
8CDL|1|AA|G|2728
8CDL|1|AA|OMU|2729
8CDL|1|AA|G|2730
8CDL|1|AA|U|2731
8CDL|1|AA|G|2732
8CDL|1|AA|A|2733

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain F

60S ribosomal protein L21-A

Chain M

60S ribosomal protein L28

Chain N

60S ribosomal protein L29

Chain a

60S ribosomal protein L42-A