HL_8CDL_064

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_064 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.0502

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CDL|1|AA|C|3025
8CDL|1|AA|G|3026
8CDL|1|AA|A|3027
8CDL|1|AA|G|3028
8CDL|1|AA|A|3029
8CDL|1|AA|G|3030

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L9-A

Chain Y

Ubiquitin-60S ribosomal protein L40