HL_8CDL_066

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8CDL|1|AA|G|3116, 8CDL|1|AA|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_066 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0672

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8CDL|1|AA|C|3110
8CDL|1|AA|U|3111
8CDL|1|AA|G|3112
8CDL|1|AA|A|3113
8CDL|1|AA|A|3114
8CDL|1|AA|C|3115
8CDL|1|AA|G|3116
8CDL|1|AA|C|3117
8CDL|1|AA|C|3118
8CDL|1|AA|U|3119
8CDL|1|AA|C|3120
8CDL|1|AA|U|3121
8CDL|1|AA|A|3122
8CDL|1|AA|A|3123
8CDL|1|AA|G|3124

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain LL

60S ribosomal protein L9-A

Chain Y

Ubiquitin-60S ribosomal protein L40