HL_8CDL_073
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- CAGUUGGGAG
- Length
- 10 nucleotides
- Bulged bases
- 8CDL|1|Bb|U|17, 8CDL|1|Bb|G|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CDL_073 not in the Motif Atlas
- Homologous match to HL_7OSM_115
- Geometric discrepancy: 0.5292
- The information below is about HL_7OSM_115
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_04642.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8CDL|1|Bb|C|13
8CDL|1|Bb|A|14
8CDL|1|Bb|G|15
8CDL|1|Bb|U|16
8CDL|1|Bb|U|17
8CDL|1|Bb|G|18
8CDL|1|Bb|G|19
8CDL|1|Bb|G|20
8CDL|1|Bb|A|21
8CDL|1|Bb|G|22
Current chains
- Chain Bb
- Transfer RNA Phe
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain NN
- 60S ribosomal protein L11-A
Coloring options: