HL_8CDL_075

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_075 not in the Motif Atlas

Homologous match to HL_1U0B_003

Geometric discrepancy: 0.2879

The information below is about HL_1U0B_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8CDL|1|Bb|G|53
8CDL|1|Bb|U|54
8CDL|1|Bb|U|55
8CDL|1|Bb|C|56
8CDL|1|Bb|G|57
8CDL|1|Bb|A|58
8CDL|1|Bb|U|59
8CDL|1|Bb|C|60
8CDL|1|Bb|C|61

Current chains

Chain Bb

Transfer RNA Phe

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain MM

60S ribosomal protein L10

Chain NN

60S ribosomal protein L11-A