HL_8CDL_078

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_078 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1166

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8CDL|1|CC|G|124
8CDL|1|CC|U|125
8CDL|1|CC|A|126
8CDL|1|CC|U|127
8CDL|1|CC|U|128
8CDL|1|CC|C|129

Current chains

Chain CC

5.8S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA