HL_8CDL_079

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CAGCCCGGUAG

Length

11 nucleotides

Bulged bases

8CDL|1|Cc|C|16, 8CDL|1|Cc|C|17, 8CDL|1|Cc|C|18, 8CDL|1|Cc|G|19, 8CDL|1|Cc|G|20, 8CDL|1|Cc|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_079 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.1553

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8CDL|1|Cc|C|13
8CDL|1|Cc|A|14
8CDL|1|Cc|G|15
8CDL|1|Cc|C|16
8CDL|1|Cc|C|17
8CDL|1|Cc|C|18
8CDL|1|Cc|G|19
8CDL|1|Cc|G|20
8CDL|1|Cc|U|21
8CDL|1|Cc|A|22
8CDL|1|Cc|G|23

Current chains

Chain Cc

Transfer RNA fMet

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA