HL_8CDL_087

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

8CDL|1|c|U|277, 8CDL|1|c|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_087 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3314

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8CDL|1|c|C|275
8CDL|1|c|C|276
8CDL|1|c|U|277
8CDL|1|c|U|278
8CDL|1|c|G|279
8CDL|1|c|U|280
8CDL|1|c|G|281

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain j

40S ribosomal protein S6-A