HL_8CDL_093

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

ACAAUGUAAAUACCUU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDL|1|c|A|518
8CDL|1|c|C|519
8CDL|1|c|A|520
8CDL|1|c|A|521
8CDL|1|c|U|522
8CDL|1|c|G|523
8CDL|1|c|U|524
8CDL|1|c|A|525
8CDL|1|c|A|526
8CDL|1|c|A|527
8CDL|1|c|U|528
8CDL|1|c|A|529
8CDL|1|c|C|530
8CDL|1|c|C|531
8CDL|1|c|U|532
8CDL|1|c|U|533

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain m

40S ribosomal protein S9-A