3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
UGUUCAAAG
Length
9 nucleotides
Bulged bases
8CDL|1|c|G|765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CDL_095 not in the Motif Atlas
Homologous match to HL_4V88_203
Geometric discrepancy: 0.1948
The information below is about HL_4V88_203
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_47383.2
Basepair signature
cWW-F-F-cWW-F-F
Number of instances in this motif group
11

Unit IDs

8CDL|1|c|U|764
8CDL|1|c|G|765
8CDL|1|c|U|766
8CDL|1|c|U|767
8CDL|1|c|C|768
8CDL|1|c|A|769
8CDL|1|c|A|770
8CDL|1|c|A|771
8CDL|1|c|G|772

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain 0
40S ribosomal protein S24-A
Chain h
40S ribosomal protein S4-A
Chain m
40S ribosomal protein S9-A

Coloring options:


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