HL_8CDL_106

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

8CDL|1|c|U|1298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_106 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.1514

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CDL|1|c|A|1296
8CDL|1|c|G|1297
8CDL|1|c|U|1298
8CDL|1|c|G|1299
8CDL|1|c|A|1300
8CDL|1|c|U|1301

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain d

40S ribosomal protein S0-A

Chain f

40S ribosomal protein S2