HL_8CDL_114

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

8CDL|1|AA|U|545, 8CDL|1|AA|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_114 not in the Motif Atlas

Homologous match to HL_8P9A_231

Geometric discrepancy: 0.354

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13189.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8CDL|1|AA|C|543
8CDL|1|AA|C|544
8CDL|1|AA|U|545
8CDL|1|AA|C|546
8CDL|1|AA|G|547
8CDL|1|AA|G|548

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L9-A