HL_8CDL_121

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

8CDL|1|c|A|416

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_121 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.1577

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8CDL|1|c|OMC|414
8CDL|1|c|C|415
8CDL|1|c|A|416
8CDL|1|c|A|417
8CDL|1|c|G|418
8CDL|1|c|G|419

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L23-A

Chain j

40S ribosomal protein S6-A