HL_8CDL_124
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- ACUGAA(YYG)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: YYG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CDL_124 not in the Motif Atlas
- Homologous match to HL_4YCO_002
- Geometric discrepancy: 0.1658
- The information below is about HL_4YCO_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8CDL|1|Bb|A|31
8CDL|1|Bb|C|32
8CDL|1|Bb|U|33
8CDL|1|Bb|G|34
8CDL|1|Bb|A|35
8CDL|1|Bb|A|36
8CDL|1|Bb|YYG|37
8CDL|1|Bb|A|38
8CDL|1|Bb|U|39
Current chains
- Chain Bb
- Transfer RNA Phe
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Dd
- Messenger RNA
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
- Chain z
- 40S ribosomal protein S23-A
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