HL_8CDR_023

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

8CDR|1|AA|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDR_023 not in the Motif Atlas

Geometric match to HL_4V9F_036

Geometric discrepancy: 0.2892

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8CDR|1|AA|C|1023
8CDR|1|AA|G|1024
8CDR|1|AA|A|1025
8CDR|1|AA|A|1026
8CDR|1|AA|A|1027
8CDR|1|AA|U|1028
8CDR|1|AA|G|1029

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain c

Small subunit ribosomal RNA; SSU rRNA