HL_8CDR_069

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDR_069 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.1444

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8CDR|1|AA|C|3194
8CDR|1|AA|U|3195
8CDR|1|AA|U|3196
8CDR|1|AA|G|3197

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L9-A

Chain PP

60S ribosomal protein L14-A