HL_8CDR_095

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

ACAAUGUAAAUACCUU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CDR|1|c|A|518
8CDR|1|c|C|519
8CDR|1|c|A|520
8CDR|1|c|A|521
8CDR|1|c|U|522
8CDR|1|c|G|523
8CDR|1|c|U|524
8CDR|1|c|A|525
8CDR|1|c|A|526
8CDR|1|c|A|527
8CDR|1|c|U|528
8CDR|1|c|A|529
8CDR|1|c|C|530
8CDR|1|c|C|531
8CDR|1|c|U|532
8CDR|1|c|U|533

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain h

40S ribosomal protein S4-A

Chain m

40S ribosomal protein S9-A