HL_8CDR_111

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8CDR|1|c|U|1398, 8CDR|1|c|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDR_111 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2947

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8CDR|1|c|U|1396
8CDR|1|c|U|1397
8CDR|1|c|U|1398
8CDR|1|c|C|1399
8CDR|1|c|A|1400
8CDR|1|c|A|1401
8CDR|1|c|G|1402

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 4

40S ribosomal protein S28-A

Chain t

40S ribosomal protein S17-A